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Ocean Protein Portal Ver. 2

Release 6/24/2021

This version:
http://schema.oceanproteinportal.org/v2/ontology.ttl
Latest version:
http://schema.oceanproteinportal.org/v2/
Authors:
Adam Shepherd, (Woods Hole Oceanographic Institution)
Jaclyn Saunders, (Woods Hole Oceanographic Institution)
Makoto Saito, (Woods Hole Oceanographic Institution)
Danie Kinkade, (Woods Hole Oceanographic Institution)
Publisher:
Ocean Protein Portal, (Woods Hole Oceanographic Institution)
Extended Ontologies:
Sensor, Observation, Sample, and Actuator Ontology
Semantic Sensor Network
Schema.org
Download serialization:
JSON-LD RDF/XML N-Triples TTL
License:
https://spdx.org/licenses/CC0-1.0 License
Visualization:
Visualize with WebVowl
Cite as:
Shepherd, Adam; Saunders, Jaclyn; Saito, Makoto; and Kinkade, Danie (2021). Ocean Protein Portal Ontology. (Version 2). Retrieved from: http://schema.oceanproteinportal.org/v2/ontology.ttl [Date Accessed]. doi:10.5281/zenodo.4660266

doi:10.5281/zenodo.4660266
Ontology Specification Draft

Abstract

This is a place holder text for the abstract. The abstract should contain a couple of sentences summarizing the ontology and its purpose.

Introduction back to ToC

Table of Contents

Namespace declarations

Table 1: Namespaces used in the document
opp<http://schema.oceanproteinportal.org/v2/>
schema<http://schema.org>
registry<https://registry.identifiers.org/registry>
owl<http://www.w3.org/2002/07/owl>
xsd<http://www.w3.org/2001/XMLSchema>
rdfs<http://www.w3.org/2000/01/rdf-schema>
ssn<http://www.w3.org/ns/ssn>
rdf<http://www.w3.org/1999/02/22-rdf-syntax-ns>
systems<http://www.w3.org/ns/ssn/systems>
terms<http://purl.org/dc/terms>
obo<http://purl.obolibrary.org/obo>
entity<http://www.wikidata.org/entity>
default namespace<http://schema.oceanproteinportal.org/v2>
sosa<http://www.w3.org/ns/sosa>

Ocean Protein Portal Ver. 2: Overview back to ToC

This ontology has the following classes and properties.

Classes

Object Properties

Data Properties

Annotation Properties

Named Individuals

Ocean Protein Portal Ver. 2: Description back to ToC

This is a placeholder text for the description of your ontology. The description should include an explanation and a diagram explaining how the classes are related, examples of usage, etc.

Cross reference for Ocean Protein Portal Ver. 2 classes, properties and dataproperties back to ToC

This section provides details for each class and property defined by Ocean Protein Portal Ver. 2.

Classes

Agentc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/Agent

An abstract class for specifying a person, organization or software entity that performs some action acting in some predefined role.
has sub-classes
organization c, person c
is in domain of
performedAgentRole op
is in range of
performedBy op, performedOnBehalfOf op
is disjoint with
AgentRole c, Role c

AgentIdentifierc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/AgentIdentifier

An identifier for an Agent
has super-classes
Identifier c
has sub-classes
OrganizationIdentifier c, PersonIdentifier c

AgentRolec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/AgentRole

An agent performing some Role over a certain period of time (which may be unbounded).
has super-classes
is in domain of
inRole op, isAgentRoleFor op, performedAtOrganization op, performedBy op, performedOnBehalfOf op
is in range of
hasAgentRole op, performedAgentRole op, roleFor op
is disjoint with
Agent c, Role c

AminoAcidChainc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/AminoAcidChain

An actual amino acid. This is not to contain information that helps identify an amino acid, but represents the amino acid being identified. Any information here, should be shared by all other representations of the amino acid.
has super-classes
has sub-classes
Peptide c, Protein c
is in domain of
aminoAcidSequence dp, describedByIdentification op
is in range of
describesAminoAcid op
is disjoint with
AminoAcidIdentification c

AminoAcidIdentificationc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/AminoAcidIdentification

An information object for storing data about an amino acid.
has sub-classes
PeptideIdentification c, ProteinIdentification c
is in domain of
absoluteUnits dp, aminoAcidName dp, describesAminoAcid op, identificationBasedOnScore op, identificationProbability dp, identificationScore op, sampleAminoAcidProperty op
is in range of
describedByIdentification op
is disjoint with
AminoAcidChain c

AminoAcidSampleObservationc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/AminoAcidSampleObservation

A property of some amino acid that was observed in a single Sample.
has super-classes
property c, property value c
has sub-classes
PeptideSampleObservation c, ProteinSampleObservation c
is in domain of
observationInSample op
is in range of
sampleAminoAcidProperty op

BestProteinIdentificationc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/BestProteinIdentification

The best/selected identification of a specific Protein based on information in a PeptideIdentification. This means that a PeptideIdentification may have multiple Proteins that it identifies but that one of those proteins has been selected (identifiedBy) as the best identification.
has super-classes
ProteinIdentification c

BestSEQUESTDCnScorec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/BestSEQUESTDCnScore

The best SEQUEST DCn score for identifying an amino acid.
has super-classes
IdentificationScore c

BestSEQUESTXCorrScorec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/BestSEQUESTXCorrScore

The best SEQUEST XCorr score for identifying an amino acid.
has super-classes
IdentificationScore c

Cruisec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/Cruise

A deployment of some seagoing vessel on which one or more scientific objectives are studied.
has super-classes
deployment c
is in domain of
cruiseID dp
is in range of
sampleFromCruise op
is disjoint with
Station c

DataParameterc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter

A conceptual understanding of a particular parameter that could be observed/measured within some data resource. This parameter typically means to describe an observalbe or measurable "property" (or attribute) of some "entity" (or object) in relation to some "environment" using some "method". This conceptual description of a parameter helps to link across datasets that may report different units or other variances outside the scope of some "property of an entity in relation to an environment using some observational/measuring methodology".
has super-classes
property value c
is in range of
definesValuesForParameter op
has members
Data Parameter: AbsoluteUnits ni, Data Parameter: BestNCBITaxonIdentifier ni, Data Parameter: BestNCBITaxonName ni, Data Parameter: BestProteinIdProbability ni, Data Parameter: BestSequestDCnScore ni, Data Parameter: BestSequestXCorrScore ni, Data Parameter: CruiseIdentifier ni, Data Parameter: CruiseStationIdentifier ni, Data Parameter: Date ni, Data Parameter: Depth ni, Data Parameter: EnzymeCommissionIdentifier ni, Data Parameter: ISODateTimeUTC ni, Data Parameter: KeggIdentifier ni, Data Parameter: KeggOrthologyDefinition ni, Data Parameter: KeggOrthologyName ni, Data Parameter: KeggOrthologyPathway ni, Data Parameter: Latitude ni, Data Parameter: Longitude ni, Data Parameter: MaxFilterSize ni, Data Parameter: MedianRetentionTime ni, Data Parameter: MinFilterSize ni, Data Parameter: MolecularWeight ni, Data Parameter: OtherIdentifiedProteins ni, Data Parameter: PFamsIdentifier ni, Data Parameter: PFamsName ni, Data Parameter: Peptide-StartIndex ni, Data Parameter: Peptide-StopIndex ni, Data Parameter: PeptideSequence ni, Data Parameter: PeptideSpectralCountSummation ni, Data Parameter: Plus2HSpectraCount ni, Data Parameter: Plus3HSpectraCount ni, Data Parameter: Plus4HSpectraCount ni, Data Parameter: ProteinAccessionIdentifiers ni, Data Parameter: ProteinIdentifier ni, Data Parameter: ProteinName ni, Data Parameter: ProteinSequence ni, Data Parameter: SampleIdentifier ni, Data Parameter: SpectralCount ni, Data Parameter: Time ni, Data Parameter: TotalPrecursorIntensity ni, Data Parameter: TotalTIC ni, Data Parameter: UniprotIdentifier ni

DataResourcec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResource

A Dataset witha single resource at which the observations can be found.
has super-classes
dataset c
is in domain of
datasetType op
is in range of
aggregatesDataFrom op

DataResourceParameterc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter

A specification of how a DataParameter is expected to be in a DataResource in order for the DatResource to conform to a DatasetProfile.
has super-classes
property value specification c
has sub-classes
RequiredDataParameter c, recommended data parameter c
is in domain of
definesValuesForParameter op, dependsOnParameter op, isForeignKeyTo op, multiValuedDefaultDelimiter dp, parameterDataType op, parameterInResourceType op, parameterNameInResource dp, parameterValueRecommended dp, positionInDataResource dp, unitsReportedIn op
is in range of
dependsOnParameter op, includesDataParameterInSet op, isForeignKeyTo op, usesDataResourceParameter op
has members
DataResourceParameter_FASTA-ProteinIdentifier ni, DataResourceParameter_FASTA-ProteinSequence ni, DataResourceParameter_PeptideSpectralCount_AbsoluteUnits ni, DataResourceParameter_PeptideSpectralCount_BestProteinIdProbability ni, DataResourceParameter_PeptideSpectralCount_BestSequestDCnScore ni, DataResourceParameter_PeptideSpectralCount_BestSequestXCorrScore ni, DataResourceParameter_PeptideSpectralCount_CruiseIdentifier ni, DataResourceParameter_PeptideSpectralCount_CruiseStationIdentifier ni, DataResourceParameter_PeptideSpectralCount_Date ni, DataResourceParameter_PeptideSpectralCount_Depth ni, DataResourceParameter_PeptideSpectralCount_ISODateTimeUTC ni, DataResourceParameter_PeptideSpectralCount_Latitude ni, DataResourceParameter_PeptideSpectralCount_Longitude ni, DataResourceParameter_PeptideSpectralCount_MaxFilterSize ni, DataResourceParameter_PeptideSpectralCount_MedianRetentionTime ni, DataResourceParameter_PeptideSpectralCount_MinFilterSize ni, DataResourceParameter_PeptideSpectralCount_Peptide-StartIndex ni, DataResourceParameter_PeptideSpectralCount_Peptide-StopIndex ni, DataResourceParameter_PeptideSpectralCount_PeptideSequence ni, DataResourceParameter_PeptideSpectralCount_PeptideSpectralCountSummation ni, DataResourceParameter_PeptideSpectralCount_Plus2HSpectraCount ni, DataResourceParameter_PeptideSpectralCount_Plus3HSpectraCount ni, DataResourceParameter_PeptideSpectralCount_Plus4HSpectraCount ni, DataResourceParameter_PeptideSpectralCount_ProteinAccessionIdentifiers ni, DataResourceParameter_PeptideSpectralCount_ProteinIdentifier ni, DataResourceParameter_PeptideSpectralCount_SampleIdentifier ni, DataResourceParameter_PeptideSpectralCount_Time ni, DataResourceParameter_PeptideSpectralCount_TotalPrecursorIntensity ni, DataResourceParameter_PeptideSpectralCount_TotalTIC ni, DataResourceParameter_ProteinSpectralCount_BestNCBITaxonIdentifier ni, DataResourceParameter_ProteinSpectralCount_BestNCBITaxonName ni, DataResourceParameter_ProteinSpectralCount_CruiseIdentifier ni, DataResourceParameter_ProteinSpectralCount_CruiseStationIdentifier ni, DataResourceParameter_ProteinSpectralCount_Date ni, DataResourceParameter_ProteinSpectralCount_Depth ni, DataResourceParameter_ProteinSpectralCount_EnzymeCommissionIdentifier ni, DataResourceParameter_ProteinSpectralCount_ISODateTimeUTC ni, DataResourceParameter_ProteinSpectralCount_KeggIdentifier ni, DataResourceParameter_ProteinSpectralCount_KeggOrthologyDefinition ni, DataResourceParameter_ProteinSpectralCount_KeggOrthologyName ni, DataResourceParameter_ProteinSpectralCount_KeggOrthologyPathway ni, DataResourceParameter_ProteinSpectralCount_Latitude ni, DataResourceParameter_ProteinSpectralCount_Longitude ni, DataResourceParameter_ProteinSpectralCount_MaxFilterSize ni, DataResourceParameter_ProteinSpectralCount_MinFilterSize ni, DataResourceParameter_ProteinSpectralCount_OtherIdentifiedProteins ni, DataResourceParameter_ProteinSpectralCount_PFamsIdentifier ni, DataResourceParameter_ProteinSpectralCount_PFamsName ni, DataResourceParameter_ProteinSpectralCount_ProteinIdentifier ni, DataResourceParameter_ProteinSpectralCount_ProteinName ni, DataResourceParameter_ProteinSpectralCount_SampleIdentifier ni, DataResourceParameter_ProteinSpectralCount_SpectralCount ni, DataResourceParameter_ProteinSpectralCount_Time ni, DataResourceParameter_ProteinSpectralCount_UniprotIdentifier ni

DataResourceParameterSetc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameterSet

A set of DataResourceParameter instances for the purpose of validating a DatasetProfile. This helps the DatasetProfile set requirements or a grouping a DataResourceeParameters such as saying at least one of the group is required.
has super-classes
intangible c
is in domain of
includesDataParameterInSet op
is in range of
requiresOneParameterFromSet op
has members
Parameter Set: Peptide Spectral Count - Date Requirement ni

DataResourcePropertyc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceProperty

A single observed or measured property in a single DataResource. This property should be an instance of a DataParameter
has super-classes
property value c
is in domain of
parameterValueRegexPattern dp

DataResourceTypec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceType

A named type for which a DataResource can be labeled with for the sole purpose of conforming to a DatasetProfile. This is necessary becuase a DatasetProfile defines the DataParameters which must exist in a DataResource in order to properly conform.
has super-classes
creative work c
is in domain of
processableFileType op
is in range of
datasetType op, parameterInResourceType op
has members
Data Resource Type: FASTA Protein Identification ni, Data Resource Type: Peptide Total Spectral Count ni, Data Resource Type: Protein Total Spectral Count ni

datasetc back to ToC or Class ToC

IRI: http://schema.org/Dataset

has super-classes
creative work c
has sub-classes
DataResource c, OPPDataset c

DatasetIdentifierSchemec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/DatasetIdentifierScheme

The identifierScheme for a singular OPP dataset. The dataset itself is the realm in which other identifiers such as Station names, protein names, etc. are unique (but that may not be unqiue acorss other OPP datasets). This helps ensure that identifiers in a Dataset are not automatically assumed to be equivalent to each other.
has super-classes
IdentifierScheme c

DatasetProfilec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/DatasetProfile

A DatasetProfile defines the type of observations to be expected.
has super-classes
creative work c
is in domain of
requiresOneParameterFromSet op, usesDataResourceParameter op
is in range of
conformsToProfile op
has members
Dataset Profile: Peptide Spectral Count Sum ni, Dataset Profile: Protein Total Spectral Count ni

DatasetProteinIdentifierc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/DatasetProteinIdentifier

The identifier used to reference the protein across/within the Dataset.
has super-classes
ProteinIdentifier c

deploymentc back to ToC or Class ToC

IRI: http://www.w3.org/ns/ssn/Deployment

has sub-classes
Cruise c

digital documentc back to ToC or Class ToC

IRI: http://schema.org/DigitalDocument

has super-classes
creative work c
has sub-classes
MetadataResource c

EnzymeCommissionIdentifierc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/EnzymeCommissionIdentifier

An EC identifier
has super-classes
ProteinIdentifier c

feature of interestc back to ToC or Class ToC

IRI: http://www.w3.org/ns/sosa/FeatureOfInterest

is in domain of
depth dp, inVicinityOfStation op

FileTypec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/FileType

A certain type of file for which the OPP knows how to handle inn some way (ingestion, serialization for download, etc)
has super-classes
creative work c
has sub-classes
TabularFileType c
is in domain of
frictionlessDataProfile
is in range of
processableFileType op

FilterSizec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/FilterSize

The filter size in micons of the sampler.
has super-classes
property value c, system capability c
is in domain of
maximumFilterSize dp, minimumFilterSize dp
is in range of
hasFilterSize op

FrictionlessDataPackagec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/FrictionlessDataPackage

A JSON file conforming to the Frictionlessdata specification for describing data resources. This file is typically named 'datapackage.json'.
has super-classes
MetadataResource c

IdentificationScorec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/IdentificationScore

The numerical score used to identified an Amino Acid using some scoring method.
has super-classes
property c, property value c
has sub-classes
BestSEQUESTDCnScore c, BestSEQUESTXCorrScore c
is in domain of
scoreValue dp
is in range of
identificationBasedOnScore op, identificationScore op

Identifierc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/Identifier

A unique identifier attributeds to some thing within some realm or domain or scheme.
has super-classes
has sub-classes
AgentIdentifier c, ProteinIdentifier c
is in domain of
identifierMetadata op, identifierScheme op, identifierValue dp, isIdentifierOf op
is in range of
aboutIdentifier op, annotatesIdentifier op, identifier op, isIdentifierSchemeFor op
is disjoint with
IdentifierMetadata c, IdentifierScheme c

IdentifierMetadatac back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/IdentifierMetadata

Information about an identifier that helps comprehend, reuse, or contextualize the Thing being identified. This could be a non-unique label or description.
has super-classes
property value c
has sub-classes
KeggDatabaseEntry c, NCBITaxonName c, PFamsDescription c
is in domain of
aboutIdentifier op, annotatesIdentifier op
is in range of
identifierMetadata op
is disjoint with
Identifier c, IdentifierScheme c

IdentifierRegistryc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/IdentifierRegistry

A registry at which certain identifier schemes can resolve identifiers and offers certain services or resources.
has super-classes
service c
is in domain of
supportsIdentifierSchemeWith op

IdentifierRegistrySchemec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/IdentifierRegistryScheme

An IndentifierRegistry's interpretation of a specific IdentifierScheme. This deescribes how a registry represents identifiers for the related scheme as URIs, URLs, etc.
has super-classes
offer c
is in domain of
offersResolvingService op, providesServicesFor op, registrySchemePrefix dp, registrySchemePrefixIdTemplate dp, registrySchemeURI dp, registrySchemeURLTemplate dp
is in range of
resolvesIdentifiersFor op, supportsIdentifierSchemeWith op

IdentifierRegistryServicec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/IdentifierRegistryService

A service offered by an IdentifierRegistry for all identifiers of a certain IdentifierScheme
has super-classes
action c
is in domain of
resolvesIdentifiersFor op
is in range of
offersResolvingService op

IdentifierSchemec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/IdentifierScheme

A realm or domain in which a specific Identifier has a unqiue value from all the other possible Identifiers within that domain.
has sub-classes
DatasetIdentifierScheme c, ProteinIdentifierScheme c
is in domain of
isIdentifierSchemeFor op
is in range of
definesIdentifierScheme op, identifierScheme op, providesServicesFor op
has members
Identifier Scheme: ORCID ni
is disjoint with
Identifier c, IdentifierMetadata c

KeggDatabaseEntryc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/KeggDatabaseEntry

An entry in thee Kegg Database
has super-classes
IdentifierMetadata c
has sub-classes
KeggOrthology c, KeggPathway c

KeggDatabaseEntryIdentifierc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/KeggDatabaseEntryIdentifier

A Kegg Dataset Entry Identifier
has super-classes
ProteinIdentifier c
has sub-classes
KeggOrthologyIdentifier c

KeggOrthologyc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/KeggOrthology

A Kegg Orthology entry from the Kegg database
has super-classes
KeggDatabaseEntry c
is in domain of
keggOrthologyDefinition dp, keggPathway op
is in range of
keggOrthology op, keggPathwayForOrthology op

KeggOrthologyIdentifierc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/KeggOrthologyIdentifier

A Kegg Orthology Identifier
has super-classes
KeggDatabaseEntryIdentifier c
is in domain of
keggOrthology op

KeggPathwayc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/KeggPathway

A Kegg Orthology (KO) entry's pathway.
has super-classes
KeggDatabaseEntry c
is in domain of
keggPathwayForOrthology op
is in range of
keggPathway op

MetadataResourcec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/MetadataResource

A file or other type of data resource that contains the metadata describing a OPPDataset
has super-classes
digital document c
has sub-classes
FrictionlessDataPackage c
is in domain of
serializesMetadataFor op
is in range of
describedByMetadataResource op

NCBITaxonIdentifierc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/NCBITaxonIdentifier

An NCBI Taxon identifier
has super-classes
ProteinIdentifier c
is in domain of
ncbiTaxonName op

NCBITaxonNamec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/NCBITaxonName

has super-classes
IdentifierMetadata c
is in range of
ncbiTaxonName op

OPPDatasetc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/OPPDataset

A dataset suitable for the Ocean Protein Portal
has super-classes
dataset c
is in domain of
aggregatesDataFrom op, describedByMetadataResource op, shortName dp, storesResultsForSample op
is in range of
serializesMetadataFor op

organizationc back to ToC or Class ToC

IRI: http://schema.org/Organization

has super-classes
Agent c
is in range of
performedAtOrganization op
is disjoint with
person c

OrganizationIdentifierc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/OrganizationIdentifier

An identifier for an Organization
has super-classes
AgentIdentifier c

Peptidec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/Peptide

A peptide identified in a sample.
has super-classes
AminoAcidChain c
is in domain of
peptideSequence dp
is in range of
describesPeptide op

PeptideIdentificationc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/PeptideIdentification

An information object where a dataset can store observations about an identified peptide in a sample. These observations may vary across many datasets claiming to identify the same peptide, so this entity serves as a way to store these observations separate from other peptide identifiation observations while still allowing these PeptideIdentification objeect to describe the same, singular Peptide.
has super-classes
AminoAcidIdentification c
is in domain of
bestSEQUESTDCnScore dp, bestSEQUESTXCorrScore dp, describesPeptide op, medianRetentionTime dp, samplePeptideProperty op, spectralCountSum dp, startIndex dp, stopIndex dp, suggestsProtein op, totalPrecursorIntensity dp, totalTIC dp
is in range of
observedPeptide op, suggestsProtein op

PeptideIdentifiedProteinc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/PeptideIdentifiedProtein

The peptide suggests tthat the subsequent Protein was a possible identification. The best identified protein is specified by setting the bestProtein property to TRUE.
is in domain of
bestProtein dp, forProteinIdentification op

PeptideSampleObservationc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/PeptideSampleObservation

Some property of a peptide identification that was observed in a single sample.
has super-classes
AminoAcidSampleObservation c
has sub-classes
PeptideSpectralCountSum c
is in range of
samplePeptideProperty op

PeptideSpectralCountSumc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/PeptideSpectralCountSum

The total spectral count of some identified peptide from a single sample.
has super-classes
PeptideSampleObservation c
is in domain of
plus2HSpectraCount dp, plus3HSpectraCount dp, plus4HSpectraCount dp

personc back to ToC or Class ToC

IRI: http://schema.org/Person

has super-classes
Agent c
is disjoint with
organization c

PersonIdentifierc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/PersonIdentifier

An identifier for a Person
has super-classes
AgentIdentifier c

PFamsDescriptionc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/PFamsDescription

The PFams description for this Protein
has super-classes
IdentifierMetadata c

PFamsIdentifierc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/PFamsIdentifier

A PFams identifier
has super-classes
ProteinIdentifier c

propertyc back to ToC or Class ToC

IRI: http://www.w3.org/ns/ssn/Property

has sub-classes
AminoAcidSampleObservation c, IdentificationScore c, system capability c

property valuec back to ToC or Class ToC

IRI: http://schema.org/PropertyValue

has sub-classes
AminoAcidSampleObservation c, DataParameter c, DataResourceProperty c, FilterSize c, IdentificationScore c, IdentifierMetadata c

Proteinc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/Protein

The actual Protein being identified in datasets. This real-world Protein is identified by a single amino acid sequence regardless of variations across ProteinIdentifications that describe this same, single Protein
has super-classes
AminoAcidChain c
is in domain of
proteinSequence dp
is in range of
describesProtein op

ProteinIdentificationc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/ProteinIdentification

A protein identification made based on information of a peptide identification. This entity serves as an information object used within a Dataset to identify and describe an actual Protein. Where a Protein has a single amino acid sequence that will not vary across datasets submitted to the OPP, the reported protein names, etc may slightly vary across these datasets. ProteinIdentification exists so that individual datasets can report their findings and remain separate from other ProteinIdentification while still describing the exact same Protein with the same amino acid sequence.
has super-classes
AminoAcidIdentification c
has sub-classes
BestProteinIdentification c
is in domain of
describesProtein op, proteinIdentifier dp, proteinName dp, sampleProteinProperty op
is in range of
forProteinIdentification op

ProteinIdentifierc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/ProteinIdentifier

has super-classes
Identifier c
has sub-classes
DatasetProteinIdentifier c, EnzymeCommissionIdentifier c, KeggDatabaseEntryIdentifier c, NCBITaxonIdentifier c, PFamsIdentifier c, UniprotIdentifier c

ProteinIdentifierSchemec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/ProteinIdentifierScheme

A class of identifier schemes used to unqiuely identify proteins.
has super-classes
IdentifierScheme c
has members
Identifier Scheme: EnzymeCommission ni, Identifier Scheme: Kegg ni, Identifier Scheme: NCBI Taxonomy ni, Identifier Scheme: PFam ni, Identifier Scheme: Uniprot ni

ProteinSampleObservationc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/ProteinSampleObservation

Some property of a protein identification that was observed in a single sample.
has super-classes
AminoAcidSampleObservation c
has sub-classes
ProteinTotalSpectralCount c
is in range of
sampleProteinProperty op

ProteinTotalSpectralCountc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/ProteinTotalSpectralCount

The total spectral count of some identified protein from a single sample.
has super-classes
ProteinSampleObservation c

recommended data parameterc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/RecommendedDataParameter

has super-classes
DataResourceParameter c

RequiredDataParameterc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/RequiredDataParameter

has super-classes
DataResourceParameter c

Rolec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/Role

A certain status, or position, played by some Agent that qualifies/contextualizes the actions performed by that Agent.
has super-classes
intangible c
is in domain of
roleFor op
is in range of
inRole op, providesRole op
has members
Role: Author ni, Role: Contact ni, Role: Contributor ni, Role: Publisher ni
is disjoint with
Agent c, AgentRole c

samplec back to ToC or Class ToC

IRI: http://www.w3.org/ns/sosa/Sample

is in domain of
observedPeptide op, sampleFromCruise op
is in range of
observationInSample op, storesResultsForSample op

samplerc back to ToC or Class ToC

IRI: http://www.w3.org/ns/sosa/Sampler

is in domain of
hasFilterSize op

Stationc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/Station

A generally agreed upon location at which sampling occurred. This agreement enables the comparison of collected data over different reference frames such as time.
has super-classes
is in domain of
stationName dp
is in range of
inVicinityOfStation op
is disjoint with
Cruise c

system capabilityc back to ToC or Class ToC

IRI: http://www.w3.org/ns/ssn/systems/SystemCapability

has super-classes
property c
has sub-classes
FilterSize c

TabularFileTypec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/TabularFileType

A proxy for any tabular data file. This is useful for software that can detect a certain DataResource as being tabular for ingestion or serialization.
has super-classes
FileType c

UniprotIdentifierc back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/UniprotIdentifier

A Uniprot identifier
has super-classes
ProteinIdentifier c

UnitOfMeasurec back to ToC or Class ToC

IRI: http://schema.oceanproteinportal.org/v2/UnitOfMeasure

The units used to record some DataParameter in a DataResource.
has super-classes
intangible c
is in range of
unitsReportedIn op
has members
UnitOfMeasure: Decimal Degrees ni, UnitOfMeasure: Femtomoles per Liter ni, UnitOfMeasure: KiloDaltons ni, UnitOfMeasure: Meters ni, UnitOfMeasure: Microns ni

Object Properties

aboutIdentifierop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/aboutIdentifier

This metadata is about the specified Identifier
has domain
IdentifierMetadata c
has range
Identifier c
is inverse of
identifierMetadata op

aggregatesDataFromop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/aggregatesDataFrom

This Dataset is comprised of the following other DataResources.
has domain
OPPDataset c
has range
DataResource c

annotatesIdentifierop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/annotatesIdentifier

The identifer for which this information object annotates
has domain
IdentifierMetadata c
has range
Identifier c
is inverse of
identifierMetadata op

conformsToProfileop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/conformsToProfile

The dataset conforms to the Dataset Profile. Meaning to presents the profile's expected observations.
has domain
DataResource c or OPPDataset c
has range
DatasetProfile c

datasetTypeop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/datasetType

Defines the type of Dataset or DataResource.
has domain
DataResource c
has range
DataResourceType c

definesIdentifierSchemeop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/definesIdentifierScheme

The IdentifierScheme defined by some Thing. In the case fo the OPP, a single Dataset defines an IdentifierScheme for its local identifiers.
has domain
thing c
has range
IdentifierScheme c

definesValuesForParameterop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/definesValuesForParameter

This Specification is being defined for the following DataParameter.

has characteristics: functional

has domain
DataResourceParameter c
has range
DataParameter c

dependsOnParameterop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/dependsOnParameter

A another DataResourceParameter which must exist in a DataResource for the DatasetProfile to be valid for a conforming Dataset.
has domain
DataResourceParameter c
has range
DataResourceParameter c

describedByIdentificationop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/describedByIdentification

The identification that describes this amino acid
has domain
AminoAcidChain c
has range
AminoAcidIdentification c
is inverse of
describesAminoAcid op

describedByMetadataResourceop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/describedByMetadataResource

The MetadataResource that describes this OPPDataset
has domain
OPPDataset c
has range
MetadataResource c
is inverse of
serializesMetadataFor op

describesAminoAcidop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/describesAminoAcid

The AminoAcidChain being described by this information.

has characteristics: functional

has sub-properties
describesPeptide op, describesProtein op
has domain
AminoAcidIdentification c
has range
AminoAcidChain c
is inverse of
describedByIdentification op

describesPeptideop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/describesPeptide

The actual Peptide being described by this information.

has characteristics: functional

has super-properties
describesAminoAcid op
has domain
PeptideIdentification c
has range
Peptide c

describesProteinop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/describesProtein

The actual Protein being described by this Protien information.

has characteristics: functional

has super-properties
describesAminoAcid op
has domain
ProteinIdentification c
has range
Protein c

forProteinIdentificationop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/forProteinIdentification

The ProteinIdentification suggested by the Peptide.

has characteristics: functional

has domain
PeptideIdentifiedProtein c
has range
ProteinIdentification c

hasAgentRoleop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/hasAgentRole

An AgentRole in which an Agent performs some Role on this particular Thing.
has domain
thing c
has range
AgentRole c

hasFilterSizeop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/hasFilterSize

The size of the filter(s) being used during the sampling process. This could be a single value using schema:value property or a range of sizes using schema:minValue & schema:maxValue.

has characteristics: functional

has super-properties
has system capability op
has domain
sampler c
has range
FilterSize c

identificationBasedOnScoreop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/identificationBasedOnScore

The score used to determine an amino acid's identification
has super-properties
identificationScore op
has domain
AminoAcidIdentification c
has range
IdentificationScore c

identificationScoreop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/identificationScore

The score within a certain system for identifying an amino acid.
has sub-properties
identificationBasedOnScore op
has domain
AminoAcidIdentification c
has range
IdentificationScore c

identifierop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/identifier

An Identifier with a known IdentifierScheme for some Thing.
has domain
thing c
has range
Identifier c
is inverse of
isIdentifierOf op

identifierMetadataop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/identifierMetadata

An information record that annotated or further describes this Identifier.
has sub-properties
keggOrthology op, ncbiTaxonName op
has domain
Identifier c
has range
IdentifierMetadata c
is inverse of
aboutIdentifier op, annotatesIdentifier op

identifierSchemeop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/identifierScheme

The scheme in which this Identifier has a unique value.

has characteristics: functional, irreflexive

has domain
Identifier c
has range
IdentifierScheme c
is inverse of
isIdentifierSchemeFor op

includesDataParameterInSetop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/includesDataParameterInSet

A DataResourceParameter that is included in a DataResourceParameterSet.
has domain
DataResourceParameterSet c
has range
DataResourceParameter c

inRoleop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/inRole

Role being performed by some Agent

has characteristics: irreflexive

has domain
AgentRole c
has range
Role c
is inverse of
roleFor op

inVicinityOfStationop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/inVicinityOfStation

The one, named or mutally agreed upon location at which Sampling occurred. This usually means a single coordinate at which sampling occurs depsite any variance in the location of the sensor at the time of measurement. This Station helps to normalize the intent of sampling at a certain location for cross-comparison between datasets.

has characteristics: functional

has domain
feature of interest c
has range
Station c

isAgentRoleForop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/isAgentRoleFor

The Thing on/in which an Agent performs some Role.
has domain
AgentRole c
has range
thing c

isForeignKeyToop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/isForeignKeyTo

A DataResourceParameter that acts as a foreign key in some other, disjoint DataResource for the purpose of joining/linking data .

has characteristics: functional

has domain
DataResourceParameter c
has range
DataResourceParameter c

isIdentifierOfop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/isIdentifierOf

The thing being identified
has domain
Identifier c
has range
thing c
is inverse of
identifier op

isIdentifierSchemeForop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/isIdentifierSchemeFor

An Identifier that bleongs within this scheme.

has characteristics: inverse functional, irreflexive

has domain
IdentifierScheme c
has range
Identifier c
is inverse of
identifierScheme op

isInstanceOfop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/isInstanceOf

An real-world instance of some conceptual thing.
has domain
thing c
has range
thing c

keggOrthologyop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/keggOrthology

has super-properties
identifierMetadata op
has domain
KeggOrthologyIdentifier c
has range
KeggOrthology c

keggPathwayop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/keggPathway

A Pathway for some Kegg Orthology entry.
has domain
KeggOrthology c
has range
KeggPathway c
is inverse of
keggPathwayForOrthology op

keggPathwayForOrthologyop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/keggPathwayForOrthology

The orthology for which this pathway belongs
has domain
KeggPathway c
has range
KeggOrthology c
is inverse of
keggPathway op

ncbiTaxonNameop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/ncbiTaxonName

The NCBI Identifier for which this name describes.
has super-properties
identifierMetadata op
has domain
NCBITaxonIdentifier c
has range
NCBITaxonName c

observationInSampleop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/observationInSample

An observation made about a single Sample for some identified amino acid.
has super-properties
has feature of interest op
has domain
AminoAcidSampleObservation c
has range
sample c

observedPeptideop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/observedPeptide

The PeptideIdentification being asserted by the observer of some Sample.
has domain
sample c
has range
PeptideIdentification c

offersResolvingServiceop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/offersResolvingService

The identifier resolving service offered by an identifier registry's support for some identifier scheme
has super-properties
potential action op
has domain
IdentifierRegistryScheme c
has range
IdentifierRegistryService c
is inverse of
resolvesIdentifiersFor op

parameterDataTypeop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/parameterDataType

The expected data type for all values of this DataResourceParameter. This helps the OPP understand how to process, visualize, and serialize these data.

has characteristics: functional

has domain
DataResourceParameter c
has range
data type c

parameterInResourceTypeop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/parameterInResourceType

A the DataResourceType for which this DataResourceParameter specifies.

has characteristics: functional

has domain
DataResourceParameter c
has range
DataResourceType c

performedAgentRoleop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/performedAgentRole

The AgentRole which was performed by this Agent

has characteristics: irreflexive

has domain
Agent c
has range
AgentRole c
is inverse of
performedBy op

performedAtOrganizationop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/performedAtOrganization

The Organization at which the acting Agent performed the Role

has characteristics: irreflexive

has domain
AgentRole c
has range
organization c

performedByop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/performedBy

The Agent acting in some Role.

has characteristics: irreflexive

has domain
AgentRole c
has range
Agent c
is inverse of
performedAgentRole op

performedOnBehalfOfop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/performedOnBehalfOf

The Agent for which the performing Agent is acting in a certain Role.
has domain
AgentRole c
has range
Agent c

processableFileTypeop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/processableFileType

A file type for which the OPP knows how to process for ingestion
has domain
DataResourceType c
has range
FileType c

providesRoleop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/providesRole

The existence of some Thing provides the ability for some Agent to perform this Role.
has domain
thing c
has range
Role c

providesServicesForop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/providesServicesFor

The IdentifierScheme for which this IdentifierRegistryScheme provides certain Identifier services for

has characteristics: functional

has domain
IdentifierRegistryScheme c
has range
IdentifierScheme c

requiresOneParameterFromSetop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/requiresOneParameterFromSet

The DatasetProfile requires that at least one of the DataParameters described by this set of DataResourceParameters is required in the OPPDataset that conforms to the DatasetProfile.
has domain
DatasetProfile c
has range
DataResourceParameterSet c

resolvesIdentifiersForop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/resolvesIdentifiersFor

The identfier scheme at some registry for which this service resolves identifiers for.

has characteristics: functional

has domain
IdentifierRegistryService c
has range
IdentifierRegistryScheme c
is inverse of
offersResolvingService op

roleForop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/roleFor

An AgentRole performing this specific Role

has characteristics: irreflexive

has domain
Role c
has range
AgentRole c
is inverse of
inRole op

sampleAminoAcidPropertyop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/sampleAminoAcidProperty

An observation made from a single Sample about an identified amino acid

has characteristics: irreflexive

has super-properties
observed property op
has sub-properties
samplePeptideProperty op, sampleProteinProperty op
has domain
AminoAcidIdentification c
has range
AminoAcidSampleObservation c

sampleFromCruiseop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/sampleFromCruise

A pointer to the Cruise that hosted the Sampling Sensor
has domain
sample c
has range
Cruise c

samplePeptidePropertyop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/samplePeptideProperty

An observation made from a single Sample about an identified peptide
has super-properties
sampleAminoAcidProperty op
has domain
PeptideIdentification c
has range
PeptideSampleObservation c

sampleProteinPropertyop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/sampleProteinProperty

An observation made from a single Sample about an identified protein
has super-properties
sampleAminoAcidProperty op
has domain
ProteinIdentification c
has range
ProteinSampleObservation c

serializesMetadataForop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/serializesMetadataFor

The Dataset for which this MetadataResource contains a metadata description of.
has domain
MetadataResource c
has range
OPPDataset c
is inverse of
describedByMetadataResource op

storesResultsForSampleop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/storesResultsForSample

A sample for which this Dataset stores observations results for.
has domain
OPPDataset c
has range
sample c

suggestsProteinop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/suggestsProtein

This peptide suggests that the following ProteinIdentification (linked via forProteinIdentification).
has domain
PeptideIdentification c
has range
PeptideIdentification c

supportsIdentifierSchemeWithop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/supportsIdentifierSchemeWith

An IdentifierRegistry's interpretation of some IdentifierScheme through which thee registry offer's resolving services.
has super-properties
offers op
has domain
IdentifierRegistry c
has range
IdentifierRegistryScheme c

unitsReportedInop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/unitsReportedIn

The units that are expected for a certain DataParameter within a DataResource.
has domain
DataResourceParameter c
has range
UnitOfMeasure c

usesDataResourceParameterop back to ToC or Object Property ToC

IRI: http://schema.oceanproteinportal.org/v2/usesDataResourceParameter

A DataResourceParameter for which the DatasetProfile specifies certain restrictions or expectations.
has domain
DatasetProfile c
has range
DataResourceParameter c

Data Properties

absoluteUnitsdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/absoluteUnits

absolute units of a peptide or protein identification measured in fmol/liter

has characteristics: functional

has super-properties
value dp
has domain
AminoAcidIdentification c
has range
float

aminoAcidNamedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/aminoAcidName

The name given to the amino acid being identified by some identifying agent.

has characteristics: functional

has sub-properties
proteinName dp
has domain
AminoAcidIdentification c
has range
string

aminoAcidSequencedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/aminoAcidSequence

The amino acid chain, written as a string of characters, that identifies a specific amino acid.

has characteristics: functional

has sub-properties
peptideSequence dp, proteinSequence dp
has domain
AminoAcidChain c
has range
token

bestProteindp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/bestProtein

Specifies that the related ProteinIdentification is the best identified protein.

has characteristics: functional

has domain
PeptideIdentifiedProtein c
has range
boolean

bestSEQUESTDCnScoredp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/bestSEQUESTDCnScore

The best SEQUEST DCn score

has characteristics: functional

has domain
PeptideIdentification c
has range
float

bestSEQUESTXCorrScoredp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/bestSEQUESTXCorrScore

The best SEQUEST XCorr score

has characteristics: functional

has domain
PeptideIdentification c
has range
float

cruiseIDdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/cruiseID

Some label for a certain cruise on which an OPP Dataset was collected.
has domain
Cruise c
has range
string

depthdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/depth

The depth in meters where some sample was collected.

has characteristics: functional

has domain
feature of interest c
has range
float

identificationProbabilitydp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/identificationProbability

Thee probability of the correctness/confidence of the identification

has characteristics: functional

has domain
AminoAcidIdentification c
has range
float

identifierValuedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/identifierValue

The unique value in some IdentifierScheme
has domain
Identifier c
has range
token

keggNamedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/keggName

The name of some Entry in the Kegg Database. This could be thee name of an Orthology or Pathway, etc.
has super-properties
name dp
has domain
KeggOrthology c or KeggPathway c
has range
string

keggOrthologyDefinitiondp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/keggOrthologyDefinition

The Kegg Orthology Definition Example: "nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]" via `https://www.genome.jp/dbget-bin/www_bget?K00370`

has characteristics: functional

has super-properties
description dp
has domain
KeggOrthology c
has range
string

maximumFilterSizedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/maximumFilterSize

The maximum size of the filter used during sampling. Measured in microns.
has super-properties
max value dp
has domain
FilterSize c
has range
float

medianRetentionTimedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/medianRetentionTime

has characteristics: functional

has domain
PeptideIdentification c
has range
float

minimumFilterSizedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/minimumFilterSize

The minimum size of a filter used during sampling. Mesaured in microns.
has super-properties
min value dp
has domain
FilterSize c
has range
float

multiValuedDefaultDelimiterdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/multiValuedDefaultDelimiter

For a DataResourceParameter that can have multiple values (schema:multipleValues == TRUE), this is the default delimiter to be used for parsing DataResourceTypes that encode all values into one. One example might be tabular data where a cell contains multiple values separated by a semicolon.

has characteristics: functional

has domain
DataResourceParameter c
has range
token

parameterNameInResourcedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/parameterNameInResource

The name of the parameter within the DataResource.

has characteristics: functional

has super-properties
value name dp
has domain
DataResourceParameter c
has range
token

parameterValueRecommendeddp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/parameterValueRecommended

Specifies whether a DatasetProfile recommends that a certain DataParameter exist in a DataResource. Recommendation doesn't mean its required, but rather it would be useful for data consumers.

has characteristics: functional

has domain
DataResourceParameter c
has range
boolean

parameterValueRegexPatterndp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/parameterValueRegexPattern

A regex pattern defining how to find the portion of a property's value that should be used as it's actual value. Example": a property with values that contain the units in the value like '255 kDa' could be processed to obtain the numeric value with a parameterValueRegexPattern defined as "([0-9.]+)\ kDa".

has characteristics: functional

has domain
DataResourceProperty c
has range
token

peptideSequencedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/peptideSequence

The amino acid chain, written as a string of characters, that identifies a specific Peptide.

has characteristics: functional

has super-properties
aminoAcidSequence dp
has domain
Peptide c
has range
token

plus2HSpectraCountdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/plus2HSpectraCount

has characteristics: functional

has domain
PeptideSpectralCountSum c
has range
float

plus3HSpectraCountdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/plus3HSpectraCount

has characteristics: functional

has domain
PeptideSpectralCountSum c
has range
float

plus4HSpectraCountdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/plus4HSpectraCount

has characteristics: functional

has domain
PeptideSpectralCountSum c
has range
float

positionInDataResourcedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/positionInDataResource

The position in a DataResource could mean the column number in a tabular file or for FASTA files mean that the identfier = position #1 and the sequence = position #2.

has characteristics: functional

has domain
DataResourceParameter c
has range
integer

proteinIdentifierdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/proteinIdentifier

A convenience property that is a proxy for opp:identifier => opp:DatasetProteinIdentifier => identifierValue

has characteristics: functional

has domain
ProteinIdentification c
has range
token

proteinNamedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/proteinName

The name given to the protein being identified by some identifying agent.

has characteristics: functional

has super-properties
aminoAcidName dp
has domain
ProteinIdentification c
has range
string

proteinSequencedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/proteinSequence

The amino acid chain, written as a string of characters, that identifies a specific Protein.

has characteristics: functional

has super-properties
aminoAcidSequence dp
has domain
Protein c
has range
token

proteinSpectralCountdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/proteinSpectralCount

The observed spectral count for a single protein from a single sample

has characteristics: functional

has super-properties
value dp
has range
float

registrySchemePrefixdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/registrySchemePrefix

The unique prefix within an IdentifierRegistry for representing identifiers for the associated IdentifierScheme
has domain
IdentifierRegistryScheme c
has range
token

registrySchemePrefixIdTemplatedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/registrySchemePrefixIdTemplate

A template to be used for injecting an identifierValue from the associated IdentifierScheme into this IdentifierRegistry's registrySchemePrefix
has domain
IdentifierRegistryScheme c
has range
token

registrySchemeURIdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/registrySchemeURI

The URI that unqiuely identifies the associated IdentifierScheme within an IdentifierRegistry

has characteristics: functional

has domain
IdentifierRegistryScheme c
has range
any u r i

registrySchemeURLTemplatedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/registrySchemeURLTemplate

The URL template at which you can inject an identifierValue from the associated IdentifierScheme into for resolving the Identifier.

has characteristics: functional

has domain
IdentifierRegistryScheme c
has range
any u r i

scoreValuedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/scoreValue

The value of some score using a scoring method to identify an amino acid.
has super-properties
value dp
has domain
IdentificationScore c

shortNamedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/shortName

The name or label used in the OPP user interface to identify a OPPDataset. This is used for readability.
has super-properties
alternate name dp
has domain
OPPDataset c
has range
token

spectralCountSumdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/spectralCountSum

The sum of the +2, +3, +4 spectra counts.

has characteristics: functional

has super-properties
value dp
has domain
PeptideIdentification c
has range
float

startIndexdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/startIndex

The start index
has domain
PeptideIdentification c
has range
integer

stationNamedp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/stationName

The name of some Station.
has domain
Station c
has range
string

stopIndexdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/stopIndex

The stop index
has domain
PeptideIdentification c
has range
integer

totalPrecursorIntensitydp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/totalPrecursorIntensity

has characteristics: functional

has domain
PeptideIdentification c
has range
float

totalTICdp back to ToC or Data Property ToC

IRI: http://schema.oceanproteinportal.org/v2/totalTIC

has characteristics: functional

has domain
PeptideIdentification c
has range
float

Annotation Properties

conceptualModelap back to ToC or Annotation Property ToC

IRI: http://schema.oceanproteinportal.org/v2/conceptualModel

A link to a visual drawing of the conceputal model for a certain class
has domain
thing c
has range
any u r i

creatorap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/creator

describedinConceptualModelOfap back to ToC or Annotation Property ToC

IRI: http://schema.oceanproteinportal.org/v2/describedinConceptualModelOf

The conceptual model the describes this class can be found as an annotation of the following target class.
has domain
thing c
has range
thing c

descriptionap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/description

frictionlessDataProfileap back to ToC or Annotation Property ToC

IRI: http://schema.oceanproteinportal.org/v2/frictionlessDataProfile

A FrictionlessData profile. See specs.frictionlessdata.io
has domain
FileType c
has range
token

frictionlessDataValueTypeap back to ToC or Annotation Property ToC

IRI: http://schema.oceanproteinportal.org/v2/frictionlessDataValueType

The Frictionlessdata data type for a specific field (DataParameter) in a DataResource.
has domain
data type c
has range
token

issuedap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/issued

licenseap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/license

modifiedap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/modified

parameterValueConstraintsap back to ToC or Annotation Property ToC

IRI: http://schema.oceanproteinportal.org/v2/parameterValueConstraints

Any constraints on the parameter values to help with processing a certain DataParameter. This property is used in the datapackage.json for describing a tabular-data-resource field.

parameterValueDelimiterap back to ToC or Annotation Property ToC

IRI: http://schema.oceanproteinportal.org/v2/parameterValueDelimiter

Defines a delimiter to override the multipleValuedDefaultDelimiter for a certain DataParameter. This property is used in the datapackage.json for describing a tabular-data-resource field.
has range
token

parameterValueMissingValuesap back to ToC or Annotation Property ToC

IRI: http://schema.oceanproteinportal.org/v2/parameterValueMissingValues

A set of values for a DataParameter that specify that no data were recorded for that instance of an observation.
has range
token

publisherap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/publisher

registrySchemeTemplateReplacementTokenap back to ToC or Annotation Property ToC

IRI: http://schema.oceanproteinportal.org/v2/registrySchemeTemplateReplacementToken

The string of charactersin any template value of an IdentifierRegistryScheme or IdentifierRegistryService, encoded for regular expression, that could be replaced with the value of an Identifier's identifierValue.

same asap back to ToC or Annotation Property ToC

IRI: http://www.w3.org/2002/07/owl#sameAs

titleap back to ToC or Annotation Property ToC

IRI: http://purl.org/dc/terms/title

Named Individuals

Data Parameter: AbsoluteUnitsni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_AbsoluteUnits

belongs to
DataParameter c

Data Parameter: BestNCBITaxonIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_BestNCBITaxonIdentifier

belongs to
DataParameter c

Data Parameter: BestNCBITaxonNameni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_BestNCBITaxonName

belongs to
DataParameter c

Data Parameter: BestProteinIdProbabilityni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_BestProteinIdProbability

belongs to
DataParameter c

Data Parameter: BestSequestDCnScoreni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_BestSequestDCnScore

belongs to
DataParameter c

Data Parameter: BestSequestXCorrScoreni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_BestSequestXCorrScore

belongs to
DataParameter c

Data Parameter: CruiseIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_CruiseIdentifier

belongs to
DataParameter c

Data Parameter: CruiseStationIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_CruiseStationIdentifier

belongs to
DataParameter c

Data Parameter: Dateni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_Date

belongs to
DataParameter c

Data Parameter: Depthni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_Depth

belongs to
DataParameter c

Data Parameter: EnzymeCommissionIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_EnzymeCommissionIdentifier

belongs to
DataParameter c

Data Parameter: ISODateTimeUTCni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_ISODateTimeUTC

belongs to
DataParameter c

Data Parameter: KeggIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_KeggIdentifier

belongs to
DataParameter c

Data Parameter: KeggOrthologyDefinitionni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_KeggOrthologyDefinition

belongs to
DataParameter c

Data Parameter: KeggOrthologyNameni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_KeggOrthologyName

belongs to
DataParameter c

Data Parameter: KeggOrthologyPathwayni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_KeggOrthologyPathway

belongs to
DataParameter c

Data Parameter: Latitudeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_Latitude

belongs to
DataParameter c

Data Parameter: Longitudeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_Longitude

belongs to
DataParameter c

Data Parameter: MaxFilterSizeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_MaxFilterSize

belongs to
DataParameter c

Data Parameter: MedianRetentionTimeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_MedianRetentionTime

belongs to
DataParameter c

Data Parameter: MinFilterSizeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_MinFilterSize

belongs to
DataParameter c

Data Parameter: MolecularWeightni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_MolecularWeight

belongs to
DataParameter c

Data Parameter: OtherIdentifiedProteinsni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_OtherIdentifiedProteins

belongs to
DataParameter c

Data Parameter: Peptide-StartIndexni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_Peptide-StartIndex

belongs to
DataParameter c

Data Parameter: Peptide-StopIndexni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_Peptide-StopIndex

belongs to
DataParameter c

Data Parameter: PeptideSequenceni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_PeptideSequence

belongs to
DataParameter c

Data Parameter: PeptideSpectralCountSummationni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_PeptideSpectralCountSummation

belongs to
DataParameter c

Data Parameter: PFamsIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_PFamsIdentifier

belongs to
DataParameter c

Data Parameter: PFamsNameni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_PFamsName

belongs to
DataParameter c

Data Parameter: Plus2HSpectraCountni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_Plus2HSpectraCount

belongs to
DataParameter c

Data Parameter: Plus3HSpectraCountni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_Plus3HSpectraCount

belongs to
DataParameter c

Data Parameter: Plus4HSpectraCountni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_Plus4HSpectraCount

belongs to
DataParameter c

Data Parameter: ProteinAccessionIdentifiersni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_ProteinAccessionIdentifiers

belongs to
DataParameter c

Data Parameter: ProteinIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_ProteinIdentifier

belongs to
DataParameter c

Data Parameter: ProteinNameni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_ProteinName

belongs to
DataParameter c

Data Parameter: ProteinSequenceni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_ProteinSequence

belongs to
DataParameter c

Data Parameter: SampleIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_SampleIdentifier

belongs to
DataParameter c

Data Parameter: SpectralCountni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_SpectralCount

belongs to
DataParameter c

Data Parameter: Timeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_Time

belongs to
DataParameter c

Data Parameter: TotalPrecursorIntensityni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_TotalPrecursorIntensity

belongs to
DataParameter c

Data Parameter: TotalTICni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_TotalTIC

belongs to
DataParameter c

Data Parameter: UniprotIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataParameter_UniprotIdentifier

belongs to
DataParameter c

Data Resource Type: FASTA Protein Identificationni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceType_FASTA-ProteinIdentification

belongs to
DataResourceType c

Data Resource Type: Peptide Total Spectral Countni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceType_PeptideTotalSpectralCount

belongs to
DataResourceType c

Data Resource Type: Protein Total Spectral Countni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceType_ProteinTotalSpectralCount

belongs to
DataResourceType c

DataResourceParameter_FASTA-ProteinIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_FASTA-ProteinIdentifier

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: ProteinIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: FASTA Protein Identification
positionInDataResource dp "1"^^integer
description dp "In the 'biopython' this parameter refers to the value at Bio.SeqIO.parse()->record.id"^^token
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_FASTA-ProteinSequenceni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_FASTA-ProteinSequence

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: ProteinSequence
parameterDataType op text
parameterInResourceType op Data Resource Type: FASTA Protein Identification
positionInDataResource dp "2"^^integer
description dp "In the 'biopython' this parameter refers to the value at Bio.SeqIO.parse()->record.seq"^^token
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_PeptideSpectralCount_AbsoluteUnitsni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_AbsoluteUnits

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: AbsoluteUnits
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
unitsReportedIn op UnitOfMeasure: Femtomoles per Liter
parameterNameInResource dp "absolute_units_fmol-L"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_BestProteinIdProbabilityni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_BestProteinIdProbability

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: BestProteinIdProbability
dependsOnParameter op DataResourceParameter_PeptideSpectralCount_ProteinIdentifier
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "best_protein_id_probability"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_BestSequestDCnScoreni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_BestSequestDCnScore

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: BestSequestDCnScore
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "best_sequest_DCn_score"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_BestSequestXCorrScoreni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_BestSequestXCorrScore

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: BestSequestXCorrScore
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "best_sequest_Xcorr_score"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_CruiseIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_CruiseIdentifier

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: CruiseIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "cruise_id"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_CruiseStationIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_CruiseStationIdentifier

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: CruiseStationIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "station_id"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_Dateni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_Date

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Date
parameterDataType op date
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "date_y-m-d"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_Depthni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_Depth

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Depth
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
unitsReportedIn op UnitOfMeasure: Meters
parameterNameInResource dp "depth_m"^^token
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_PeptideSpectralCount_ISODateTimeUTCni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_ISODateTimeUTC

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: ISODateTimeUTC
parameterDataType op date time
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "ISO_DateTime_UTC"^^token
parameterValueRecommended dp "true"^^boolean
multiple values dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_Latitudeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_Latitude

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Latitude
dependsOnParameter op DataResourceParameter_PeptideSpectralCount_Longitude
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
unitsReportedIn op UnitOfMeasure: Decimal Degrees
parameterNameInResource dp "latitude_dd"^^token
max value dp "90.0"^^float
min value dp "-90.0"^^float
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_PeptideSpectralCount_Longitudeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_Longitude

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Longitude
dependsOnParameter op DataResourceParameter_PeptideSpectralCount_Latitude
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
unitsReportedIn op UnitOfMeasure: Decimal Degrees
parameterNameInResource dp "longitude_dd"^^token
max value dp "180.0"^^float
min value dp "-180.0"^^float
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_PeptideSpectralCount_MaxFilterSizeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_MaxFilterSize

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: MaxFilterSize
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
unitsReportedIn op UnitOfMeasure: Microns
parameterNameInResource dp "maximum_filter_size_microns"^^token
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_PeptideSpectralCount_MedianRetentionTimeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_MedianRetentionTime

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: MedianRetentionTime
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "median_retention_time"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_MinFilterSizeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_MinFilterSize

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: MinFilterSize
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
unitsReportedIn op UnitOfMeasure: Microns
parameterNameInResource dp "minimum_filter_size_microns"^^token
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_PeptideSpectralCount_Peptide-StartIndexni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_Peptide-StartIndex

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Peptide-StartIndex
dependsOnParameter op DataResourceParameter_PeptideSpectralCount_Peptide-StopIndex
parameterDataType op integer
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "peptide_start_index"^^token
parameterValueRecommended dp "true"^^boolean
multiple values dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_Peptide-StopIndexni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_Peptide-StopIndex

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Peptide-StopIndex
dependsOnParameter op DataResourceParameter_PeptideSpectralCount_Peptide-StartIndex
parameterDataType op integer
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "peptide_stop_index"^^token
parameterValueRecommended dp "true"^^boolean
multiple values dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_PeptideSequenceni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_PeptideSequence

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: PeptideSequence
parameterDataType op text
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "peptide_sequence"^^token
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_PeptideSpectralCount_PeptideSpectralCountSummationni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_PeptideSpectralCountSummation

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: PeptideSpectralCountSummation
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "spectral_count_sum"^^token
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_PeptideSpectralCount_Plus2HSpectraCountni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_Plus2HSpectraCount

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Plus2HSpectraCount
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "plus2H_spectra_count"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_Plus3HSpectraCountni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_Plus3HSpectraCount

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Plus3HSpectraCount
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "plus3H_spectra_count"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_Plus4HSpectraCountni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_Plus4HSpectraCount

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Plus4HSpectraCount
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "plus4H_spectra_count"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_ProteinAccessionIdentifiersni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_ProteinAccessionIdentifiers

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: ProteinAccessionIdentifiers
isForeignKeyTo op DataResourceParameter_FASTA-ProteinIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
multiValuedDefaultDelimiter dp "||"^^token
parameterNameInResource dp "other_protein_ids"^^token
multiple values dp "true"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_ProteinIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_ProteinIdentifier

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: ProteinIdentifier
isForeignKeyTo op DataResourceParameter_ProteinSpectralCount_ProteinIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "protein_id"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_SampleIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_SampleIdentifier

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: SampleIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "sample_id"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_Timeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_Time

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Time
dependsOnParameter op DataResourceParameter_PeptideSpectralCount_Date
parameterDataType op time
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "time_h-m-s"^^token
default value dp "00:00:00"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_TotalPrecursorIntensityni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_TotalPrecursorIntensity

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: TotalPrecursorIntensity
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "total_precursor_intensity"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_PeptideSpectralCount_TotalTICni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_PeptideSpectralCount_TotalTIC

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: TotalTIC
parameterDataType op float
parameterInResourceType op Data Resource Type: Peptide Total Spectral Count
parameterNameInResource dp "TIC"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_BestNCBITaxonIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_BestNCBITaxonIdentifier

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: BestNCBITaxonIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
parameterNameInResource dp "ncbi_id"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_BestNCBITaxonNameni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_BestNCBITaxonName

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: BestNCBITaxonName
dependsOnParameter op DataResourceParameter_ProteinSpectralCount_BestNCBITaxonIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
parameterNameInResource dp "ncbi_name"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_CruiseIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_CruiseIdentifier

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: CruiseIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
parameterNameInResource dp "cruise_id"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_CruiseStationIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_CruiseStationIdentifier

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: CruiseStationIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
parameterNameInResource dp "station_id"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_Dateni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_Date

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Date
parameterDataType op date
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
parameterNameInResource dp "date_y-m-d"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_Depthni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_Depth

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Depth
parameterDataType op float
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
unitsReportedIn op UnitOfMeasure: Meters
parameterNameInResource dp "depth_m"^^token
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_ProteinSpectralCount_EnzymeCommissionIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_EnzymeCommissionIdentifier

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: EnzymeCommissionIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
multiValuedDefaultDelimiter dp "||"^^token
parameterNameInResource dp "enzyme_comm_id"^^token
multiple values dp "true"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_ISODateTimeUTCni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_ISODateTimeUTC

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: ISODateTimeUTC
parameterDataType op date time
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
parameterNameInResource dp "ISO_DateTime_UTC"^^token
parameterValueRecommended dp "true"^^boolean
multiple values dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_KeggIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_KeggIdentifier

If multiple values exist, the Kegg Pathway, Definition and other Kegg metadata are ignored because there is currently no defineed way to structure that information to ensure it logically matches to the list of identifiers here.
belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: KeggIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
multiValuedDefaultDelimiter dp "||"^^token
parameterNameInResource dp "kegg_id"^^token
multiple values dp "true"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_KeggOrthologyDefinitionni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_KeggOrthologyDefinition

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: KeggOrthologyDefinition
dependsOnParameter op DataResourceParameter_ProteinSpectralCount_KeggIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
parameterNameInResource dp "kegg_description"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_KeggOrthologyNameni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_KeggOrthologyName

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: KeggOrthologyName
dependsOnParameter op DataResourceParameter_ProteinSpectralCount_KeggIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
parameterNameInResource dp "kegg_name"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_KeggOrthologyPathwayni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_KeggOrthologyPathway

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: KeggOrthologyPathway
dependsOnParameter op DataResourceParameter_ProteinSpectralCount_KeggIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
multiValuedDefaultDelimiter dp "||"^^token
parameterNameInResource dp "kegg_pathway"^^token
multiple values dp "true"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_Latitudeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_Latitude

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Latitude
dependsOnParameter op DataResourceParameter_ProteinSpectralCount_Longitude
parameterDataType op float
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
unitsReportedIn op UnitOfMeasure: Decimal Degrees
parameterNameInResource dp "latitude_dd"^^token
max value dp "90.0"^^float
min value dp "-90.0"^^float
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_ProteinSpectralCount_Longitudeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_Longitude

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Longitude
dependsOnParameter op DataResourceParameter_ProteinSpectralCount_Latitude
parameterDataType op float
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
unitsReportedIn op UnitOfMeasure: Decimal Degrees
parameterNameInResource dp "longitude_dd"^^token
max value dp "180.0"^^float
min value dp "-180.0"^^float
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_ProteinSpectralCount_MaxFilterSizeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_MaxFilterSize

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: MaxFilterSize
parameterDataType op float
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
unitsReportedIn op UnitOfMeasure: Microns
parameterNameInResource dp "maximum_filter_size_microns"^^token
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_ProteinSpectralCount_MinFilterSizeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_MinFilterSize

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: MinFilterSize
parameterDataType op float
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
unitsReportedIn op UnitOfMeasure: Microns
parameterNameInResource dp "minimum_filter_size_microns"^^token
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_ProteinSpectralCount_OtherIdentifiedProteinsni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_OtherIdentifiedProteins

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: OtherIdentifiedProteins
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
multiValuedDefaultDelimiter dp "||"^^token
parameterNameInResource dp "other_identified_proteins"^^token
multiple values dp "true"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_PFamsIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_PFamsIdentifier

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: PFamsIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
multiValuedDefaultDelimiter dp "||"^^token
parameterNameInResource dp "pfams_id"^^token
multiple values dp "true"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_PFamsNameni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_PFamsName

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: PFamsName
dependsOnParameter op DataResourceParameter_ProteinSpectralCount_PFamsIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
multiValuedDefaultDelimiter dp "||"^^token
parameterNameInResource dp "pfams_name"^^token
multiple values dp "true"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_ProteinIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_ProteinIdentifier

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: ProteinIdentifier
isForeignKeyTo op DataResourceParameter_FASTA-ProteinIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
parameterNameInResource dp "protein_id"^^token
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_ProteinSpectralCount_ProteinNameni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_ProteinName

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: ProteinName
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
parameterNameInResource dp "protein_name"^^token
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_ProteinSpectralCount_SampleIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_SampleIdentifier

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: SampleIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
parameterNameInResource dp "sample_id"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_SpectralCountni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_SpectralCount

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: SpectralCount
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
parameterNameInResource dp "spectral_count"^^token
multiple values dp "false"^^boolean
value required dp "true"^^boolean

DataResourceParameter_ProteinSpectralCount_Timeni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_Time

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: Time
dependsOnParameter op DataResourceParameter_ProteinSpectralCount_Date
parameterDataType op time
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
parameterNameInResource dp "time_h-m-s"^^token
default value dp "00:00:00"^^token
multiple values dp "false"^^boolean
value required dp "false"^^boolean

DataResourceParameter_ProteinSpectralCount_UniprotIdentifierni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameter_ProteinSpectralCount_UniprotIdentifier

belongs to
DataResourceParameter c
has facts
definesValuesForParameter op Data Parameter: UniprotIdentifier
parameterDataType op text
parameterInResourceType op Data Resource Type: Protein Total Spectral Count
multiValuedDefaultDelimiter dp "||"^^token
parameterNameInResource dp "uniprot_id"^^token
multiple values dp "true"^^boolean
value required dp "false"^^boolean

Dataset Profile: Peptide Spectral Count Sumni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DatasetProfile_PeptideSpectralCountSum

belongs to
DatasetProfile c
has facts
requiresOneParameterFromSet op Parameter Set: Peptide Spectral Count - Date Requirement
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_AbsoluteUnits
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_BestProteinIdProbability
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_BestSequestDCnScore
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_BestSequestXCorrScore
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_CruiseIdentifier
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_CruiseStationIdentifier
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Date
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Depth
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_ISODateTimeUTC
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Latitude
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Longitude
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_MaxFilterSize
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_MedianRetentionTime
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_MinFilterSize
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Peptide-StartIndex
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Peptide-StopIndex
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_PeptideSequence
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_PeptideSpectralCountSummation
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Plus2HSpectraCount
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Plus3HSpectraCount
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Plus4HSpectraCount
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_ProteinAccessionIdentifiers
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_ProteinIdentifier
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_SampleIdentifier
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Time
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_TotalPrecursorIntensity
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_TotalTIC

Dataset Profile: Protein Total Spectral Countni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DatasetProfile_ProteinTotalSpectralCount

belongs to
DatasetProfile c
has facts
requiresOneParameterFromSet op Parameter Set: Peptide Spectral Count - Date Requirement
usesDataResourceParameter op DataResourceParameter_FASTA-ProteinIdentifier
usesDataResourceParameter op DataResourceParameter_FASTA-ProteinSequence
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_AbsoluteUnits
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_BestProteinIdProbability
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_BestSequestDCnScore
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_BestSequestXCorrScore
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_CruiseIdentifier
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_CruiseStationIdentifier
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Date
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Depth
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_ISODateTimeUTC
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Latitude
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Longitude
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_MaxFilterSize
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_MedianRetentionTime
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_MinFilterSize
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Peptide-StartIndex
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Peptide-StopIndex
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_PeptideSequence
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_PeptideSpectralCountSummation
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Plus2HSpectraCount
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Plus3HSpectraCount
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Plus4HSpectraCount
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_ProteinAccessionIdentifiers
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_ProteinIdentifier
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_SampleIdentifier
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_Time
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_TotalPrecursorIntensity
usesDataResourceParameter op DataResourceParameter_PeptideSpectralCount_TotalTIC
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_BestNCBITaxonIdentifier
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_BestNCBITaxonName
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_CruiseIdentifier
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_CruiseStationIdentifier
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_Date
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_Depth
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_EnzymeCommissionIdentifier
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_ISODateTimeUTC
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_KeggIdentifier
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_KeggOrthologyDefinition
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_KeggOrthologyName
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_KeggOrthologyPathway
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_Latitude
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_Longitude
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_MaxFilterSize
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_MinFilterSize
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_OtherIdentifiedProteins
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_PFamsIdentifier
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_PFamsName
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_ProteinIdentifier
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_ProteinName
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_SampleIdentifier
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_SpectralCount
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_Time
usesDataResourceParameter op DataResourceParameter_ProteinSpectralCount_UniprotIdentifier

dateni back to ToC or Named Individual ToC

IRI: http://schema.org/Date

date timeni back to ToC or Named Individual ToC

IRI: http://schema.org/DateTime

floatni back to ToC or Named Individual ToC

IRI: http://schema.org/Float

Identifier Scheme: EnzymeCommissionni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/IdentifierScheme_EnzymeCommission

belongs to
ProteinIdentifierScheme c

Identifier Scheme: Keggni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/IdentifierScheme_Kegg

belongs to
ProteinIdentifierScheme c

Identifier Scheme: NCBI Taxonomyni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/IdentifierScheme_NCBITaxonomy

belongs to
ProteinIdentifierScheme c

Identifier Scheme: ORCIDni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/IdentifierScheme_ORCID

belongs to
IdentifierScheme c

Identifier Scheme: PFamni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/IdentifierScheme_PFam

belongs to
ProteinIdentifierScheme c

Identifier Scheme: Uniprotni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/IdentifierScheme_Uniprot

Identifier Scheme: Uniprot
belongs to
ProteinIdentifierScheme c

integerni back to ToC or Named Individual ToC

IRI: http://schema.org/Integer

Parameter Set: Peptide Spectral Count - Date Requirementni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/DataResourceParameterSet_PeptideSpectralCount_DateRequirement

belongs to
DataResourceParameterSet c
has facts
includesDataParameterInSet op DataResourceParameter_PeptideSpectralCount_Date
includesDataParameterInSet op DataResourceParameter_PeptideSpectralCount_ISODateTimeUTC

Role: Authorni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/Role_Author

belongs to
Role c

Role: Contactni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/Role_Contact

belongs to
Role c

Role: Contributorni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/Role_Contributor

belongs to
Role c

Role: Publisherni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/Role_Publisher

belongs to
Role c

textni back to ToC or Named Individual ToC

IRI: http://schema.org/Text

timeni back to ToC or Named Individual ToC

IRI: http://schema.org/Time

u r lni back to ToC or Named Individual ToC

IRI: http://schema.org/URL

UnitOfMeasure: Decimal Degreesni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/UnitOfMeasure_DecimalDegrees

belongs to
UnitOfMeasure c

UnitOfMeasure: Femtomoles per Literni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/UnitOfMeasure_Femtomoles-per-Liter

belongs to
UnitOfMeasure c

UnitOfMeasure: KiloDaltonsni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/UnitOfMeasure_KiloDaltons

belongs to
UnitOfMeasure c

UnitOfMeasure: Metersni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/UnitOfMeasure_Meters

belongs to
UnitOfMeasure c

UnitOfMeasure: Micronsni back to ToC or Named Individual ToC

IRI: http://schema.oceanproteinportal.org/v2/UnitOfMeasure_Microns

belongs to
UnitOfMeasure c

Legend back to ToC

c: Classes
op: Object Properties
dp: Data Properties
ni: Named Individuals

References back to ToC

Add your references here. It is recommended to have them as a list.

Conceptual Model back to ToC

Graphical Notation back to ToC

Identification of Amino Acids back to ToC

Sample back to ToC

Dataset back to ToC

Identifier back to ToC

Agent Role back to ToC

Acknowledgements back to ToC

The authors would like to thank Silvio Peroni for developing LODE, a Live OWL Documentation Environment, which is used for representing the Cross Referencing Section of this document and Daniel Garijo for developing Widoco, the program used to create the template used in this documentation.